Approximate Mapping of Nanopore Squiggle Data with Spatial Indexing

Posted by Jonathan Dursi on December 18, 2015 · 1 min read

This is a crosspost from Jonathan Dursi, R&D computing at scale. See the original post here.

Over at the Simpson Lab blog, I have an post describing a novel method for Directly Mapping Squiggle Data, using k-d trees to map segmented kmers; a simple proof of concept is available on github.